J3_8W51_015

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8W51|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8W51_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0539

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8W51|1|A|G|297
8W51|1|A|G|298
8W51|1|A|A|299
8W51|1|A|A|300
8W51|1|A|G|301
*
8W51|1|A|C|316
8W51|1|A|G|317
8W51|1|A|C|318
8W51|1|A|G|319
8W51|1|A|A|320
8W51|1|A|U|321
8W51|1|A|A|322
8W51|1|A|C|323
8W51|1|A|A|324
8W51|1|A|G|325
*
8W51|1|A|C|337
8W51|1|A|G|338
8W51|1|A|U|339
8W51|1|A|A|340
8W51|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24