J3_8WHX_002

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8WHX|1|A|U|801, 8WHX|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WHX_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0652

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8WHX|1|A|U|798
8WHX|1|A|G|799
8WHX|1|A|A|800
8WHX|1|A|U|801
8WHX|1|A|C|802
8WHX|1|A|U|803
8WHX|1|A|A|804
*
8WHX|1|A|U|888
8WHX|1|A|A|889
8WHX|1|A|G|890
*
8WHX|1|A|C|906
8WHX|1|A|A|907
8WHX|1|A|A|908
8WHX|1|A|A|909

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain E

50S ribosomal protein L2