J3_8WHX_015
3D structure
- PDB id
- 8WHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 8WHX|1|a|A|957, 8WHX|1|a|G|958
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WHX_015 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0904
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8WHX|1|a|A|937
8WHX|1|a|U|938
8WHX|1|a|U|939
8WHX|1|a|A|940
8WHX|1|a|A|941
8WHX|1|a|U|942
8WHX|1|a|U|943
8WHX|1|a|C|944
*
8WHX|1|a|G|955
8WHX|1|a|A|956
8WHX|1|a|A|957
8WHX|1|a|G|958
8WHX|1|a|A|959
8WHX|1|a|A|960
8WHX|1|a|C|961
8WHX|1|a|C|962
8WHX|1|a|U|963
8WHX|1|a|U|964
8WHX|1|a|A|965
8WHX|1|a|C|966
*
8WHX|1|a|G|1202
8WHX|1|a|G|1203
8WHX|1|a|C|1204
8WHX|1|a|U|1205
8WHX|1|a|U|1206
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14A
- Chain t
- 30S ribosomal protein S19
- Chain w
- Ribosome hibernation promotion factor RafH
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