J3_8WI7_002

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8WI7|1|A|U|801, 8WI7|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WI7_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.093

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8WI7|1|A|U|798
8WI7|1|A|G|799
8WI7|1|A|A|800
8WI7|1|A|U|801
8WI7|1|A|C|802
8WI7|1|A|U|803
8WI7|1|A|A|804
*
8WI7|1|A|U|888
8WI7|1|A|A|889
8WI7|1|A|G|890
*
8WI7|1|A|C|906
8WI7|1|A|A|907
8WI7|1|A|A|908
8WI7|1|A|A|909

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain E

50S ribosomal protein L2