J3_8WI9_003
3D structure
- PDB id
- 8WI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 8WI9|1|a|A|957, 8WI9|1|a|G|958
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WI9_003 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0928
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8WI9|1|a|A|937
8WI9|1|a|U|938
8WI9|1|a|U|939
8WI9|1|a|A|940
8WI9|1|a|A|941
8WI9|1|a|U|942
8WI9|1|a|U|943
8WI9|1|a|C|944
*
8WI9|1|a|G|955
8WI9|1|a|A|956
8WI9|1|a|A|957
8WI9|1|a|G|958
8WI9|1|a|A|959
8WI9|1|a|A|960
8WI9|1|a|C|961
8WI9|1|a|C|962
8WI9|1|a|U|963
8WI9|1|a|U|964
8WI9|1|a|A|965
8WI9|1|a|C|966
*
8WI9|1|a|G|1202
8WI9|1|a|G|1203
8WI9|1|a|C|1204
8WI9|1|a|U|1205
8WI9|1|a|U|1206
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14A
- Chain t
- 30S ribosomal protein S19
- Chain w
- Ribosome hibernation promotion factor RafH
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