J3_8WI9_009

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WI9_009 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.1051

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8WI9|1|a|G|50
8WI9|1|a|C|51
*
8WI9|1|a|G|361
8WI9|1|a|G|362
8WI9|1|a|A|363
8WI9|1|a|A|364
8WI9|1|a|U|365
8WI9|1|a|A|366
8WI9|1|a|U|367
*
8WI9|1|a|A|393
8WI9|1|a|G|394
8WI9|1|a|C|395

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16