J3_8WI9_017
3D structure
- PDB id
- 8WI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8WI9|1|a|U|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WI9_017 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1398
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8WI9|1|a|U|1096
8WI9|1|a|G|1097
8WI9|1|a|U|1098
*
8WI9|1|a|A|1136
8WI9|1|a|G|1137
8WI9|1|a|A|1138
8WI9|1|a|C|1139
8WI9|1|a|U|1140
8WI9|1|a|G|1141
8WI9|1|a|C|1142
*
8WI9|1|a|G|1156
8WI9|1|a|A|1157
8WI9|1|a|G|1158
8WI9|1|a|G|1159
8WI9|1|a|A|1160
8WI9|1|a|A|1161
8WI9|1|a|G|1162
8WI9|1|a|G|1163
8WI9|1|a|U|1164
8WI9|1|a|G|1165
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14A
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