J3_8WIB_013
3D structure
- PDB id
- 8WIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WIB_013 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0674
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8WIB|1|a|C|918
8WIB|1|a|A|919
8WIB|1|a|A|920
8WIB|1|a|G|921
*
8WIB|1|a|C|1326
8WIB|1|a|U|1327
8WIB|1|a|A|1328
8WIB|1|a|G|1329
8WIB|1|a|U|1330
8WIB|1|a|A|1331
8WIB|1|a|A|1332
*
8WIB|1|a|U|1355
8WIB|1|a|G|1356
8WIB|1|a|A|1357
8WIB|1|a|A|1358
8WIB|1|a|U|1359
8WIB|1|a|A|1360
8WIB|1|a|C|1361
8WIB|1|a|G|1362
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
Coloring options: