J3_8WIB_028

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIB_028 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2458

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8WIB|1|A|U|1646
8WIB|1|A|G|1647
8WIB|1|A|A|1648
8WIB|1|A|C|1649
8WIB|1|A|G|1650
*
8WIB|1|A|C|1784
8WIB|1|A|C|1785
*
8WIB|1|A|G|1788
8WIB|1|A|A|1789
8WIB|1|A|A|1790
8WIB|1|A|A|1791
8WIB|1|A|A|1792
8WIB|1|A|G|1793

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2