J3_8WIB_037

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

8WIB|1|a|U|1164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIB_037 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1349

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8WIB|1|a|U|1096
8WIB|1|a|G|1097
8WIB|1|a|U|1098
*
8WIB|1|a|A|1136
8WIB|1|a|G|1137
8WIB|1|a|A|1138
8WIB|1|a|C|1139
8WIB|1|a|U|1140
8WIB|1|a|G|1141
8WIB|1|a|C|1142
*
8WIB|1|a|G|1156
8WIB|1|a|A|1157
8WIB|1|a|G|1158
8WIB|1|a|G|1159
8WIB|1|a|A|1160
8WIB|1|a|A|1161
8WIB|1|a|G|1162
8WIB|1|a|G|1163
8WIB|1|a|U|1164
8WIB|1|a|G|1165

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

30S ribosomal protein S10

Chain o

30S ribosomal protein S14A