J3_8WIC_003

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIC_003 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0771

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8WIC|1|A|C|813
8WIC|1|A|A|814
8WIC|1|A|G|815
*
8WIC|1|A|C|847
8WIC|1|A|G|848
8WIC|1|A|A|849
8WIC|1|A|A|850
8WIC|1|A|C|851
*
8WIC|1|A|G|875
8WIC|1|A|A|876
8WIC|1|A|U|877
8WIC|1|A|G|878

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2