J3_8WIC_015

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

8WIC|1|A|U|69, 8WIC|1|A|A|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIC_015 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0811

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8WIC|1|A|A|53
8WIC|1|A|C|54
*
8WIC|1|A|G|67
8WIC|1|A|A|68
8WIC|1|A|U|69
8WIC|1|A|A|70
8WIC|1|A|A|71
8WIC|1|A|G|72
8WIC|1|A|C|73
*
8WIC|1|A|G|107
8WIC|1|A|A|108
8WIC|1|A|U|109
8WIC|1|A|G|110
8WIC|1|A|U|111

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L29

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23