J3_8WIC_019

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIC_019 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2458

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8WIC|1|A|U|1646
8WIC|1|A|G|1647
8WIC|1|A|A|1648
8WIC|1|A|C|1649
8WIC|1|A|G|1650
*
8WIC|1|A|C|1784
8WIC|1|A|C|1785
*
8WIC|1|A|G|1788
8WIC|1|A|A|1789
8WIC|1|A|A|1790
8WIC|1|A|A|1791
8WIC|1|A|A|1792
8WIC|1|A|G|1793

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2