J3_8WIC_020
3D structure
- PDB id
- 8WIC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCC*GACUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8WIC|1|A|U|2614, 8WIC|1|A|A|2650
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WIC_020 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0957
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8WIC|1|A|G|2506
8WIC|1|A|C|2507
8WIC|1|A|C|2508
*
8WIC|1|A|G|2608
8WIC|1|A|A|2609
8WIC|1|A|C|2610
8WIC|1|A|U|2611
8WIC|1|A|A|2612
8WIC|1|A|G|2613
8WIC|1|A|U|2614
8WIC|1|A|G|2615
8WIC|1|A|A|2616
8WIC|1|A|U|2617
8WIC|1|A|C|2618
8WIC|1|A|C|2619
*
8WIC|1|A|G|2645
8WIC|1|A|C|2646
8WIC|1|A|U|2647
8WIC|1|A|C|2648
8WIC|1|A|A|2649
8WIC|1|A|A|2650
8WIC|1|A|C|2651
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33A
- Chain 8
- 50S ribosomal protein L35
- Chain C
- Transfer RNA; tRNA
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
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