J3_8WIF_010
3D structure
- PDB id
- 8WIF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WIF_010 not in the Motif Atlas
- Geometric match to J3_4LFB_010
- Geometric discrepancy: 0.0801
- The information below is about J3_4LFB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.1
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8WIF|1|a|G|50
8WIF|1|a|C|51
*
8WIF|1|a|G|361
8WIF|1|a|G|362
8WIF|1|a|A|363
8WIF|1|a|A|364
8WIF|1|a|U|365
8WIF|1|a|A|366
8WIF|1|a|U|367
*
8WIF|1|a|A|393
8WIF|1|a|G|394
8WIF|1|a|C|395
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S16
Coloring options: