J3_8XP2_010
3D structure
- PDB id
- 8XP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with LARP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUC*GCUG
- Length
- 22 nucleotides
- Bulged bases
- 8XP2|1|S2|G|1256, 8XP2|1|S2|A|1258, 8XP2|1|S2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XP2|1|S2|C|1237
8XP2|1|S2|U|1238
8XP2|1|S2|U|1239
8XP2|1|S2|A|1240
8XP2|1|S2|A|1241
8XP2|1|S2|U|1242
8XP2|1|S2|U|1243
8XP2|1|S2|U|1244
*
8XP2|1|S2|G|1255
8XP2|1|S2|G|1256
8XP2|1|S2|G|1257
8XP2|1|S2|A|1258
8XP2|1|S2|A|1259
8XP2|1|S2|A|1260
8XP2|1|S2|C|1261
8XP2|1|S2|C|1262
8XP2|1|S2|U|1263
8XP2|1|S2|C|1264
*
8XP2|1|S2|G|1517
8XP2|1|S2|C|1518
8XP2|1|S2|U|1519
8XP2|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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