J3_8XSX_012

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8XSX|1|L5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|C|4970
8XSX|1|L5|A|4971
8XSX|1|L5|U|4972
*
8XSX|1|L5|G|4986
8XSX|1|L5|C|4987
8XSX|1|L5|U|4988
8XSX|1|L5|U|4989
8XSX|1|L5|C|4990
8XSX|1|L5|U|4991
*
8XSX|1|L5|A|5060
8XSX|1|L5|A|5061
8XSX|1|L5|G|5062
8XSX|1|L5|G|5063

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31