J3_8XSX_013

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAUAC*GGC*GUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L7|C|9
8XSX|1|L7|C|10
8XSX|1|L7|A|11
8XSX|1|L7|U|12
8XSX|1|L7|A|13
8XSX|1|L7|C|14
*
8XSX|1|L7|G|65
8XSX|1|L7|G|66
8XSX|1|L7|C|67
*
8XSX|1|L7|G|108
8XSX|1|L7|U|109
8XSX|1|L7|G|110

Current chains

Chain L7

5S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21