J3_8XSX_024

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8XSX|1|L5|C|216, 8XSX|1|L5|C|217, 8XSX|1|L5|A|218, 8XSX|1|L5|G|219, 8XSX|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|C|196
8XSX|1|L5|A|197
8XSX|1|L5|A|198
8XSX|1|L5|G|199
*
8XSX|1|L5|C|215
8XSX|1|L5|C|216
8XSX|1|L5|C|217
8XSX|1|L5|A|218
8XSX|1|L5|G|219
8XSX|1|L5|C|220
8XSX|1|L5|C|221
8XSX|1|L5|C|222
8XSX|1|L5|G|223
8XSX|1|L5|U|224
8XSX|1|L5|G|225
8XSX|1|L5|G|226
8XSX|1|L5|A|227
8XSX|1|L5|C|228
*
8XSX|1|L5|G|240
8XSX|1|L5|G|241
8XSX|1|L5|U|242
8XSX|1|L5|A|243
8XSX|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26