J3_8XSX_028

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8XSX|1|L5|C|704, 8XSX|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|C|451
8XSX|1|L5|A|452
8XSX|1|L5|G|453
8XSX|1|L5|U|454
8XSX|1|L5|C|455
*
8XSX|1|L5|G|701
8XSX|1|L5|U|702
8XSX|1|L5|G|703
8XSX|1|L5|C|704
8XSX|1|L5|G|705
*
8XSX|1|L5|C|1292
8XSX|1|L5|G|1293
8XSX|1|L5|A|1294
8XSX|1|L5|C|1295
8XSX|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a