3D structure

PDB id
8XSX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG
Length
31 nucleotides
Bulged bases
8XSX|1|L5|G|959, 8XSX|1|L5|G|965, 8XSX|1|L5|C|967, 8XSX|1|L5|C|968, 8XSX|1|L5|C|969, 8XSX|1|L5|U|971, 8XSX|1|L5|C|1280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8XSX|1|L5|C|712
8XSX|1|L5|C|713
*
8XSX|1|L5|G|955
8XSX|1|L5|A|956
8XSX|1|L5|G|957
8XSX|1|L5|G|958
8XSX|1|L5|G|959
8XSX|1|L5|A|960
8XSX|1|L5|G|961
8XSX|1|L5|C|962
8XSX|1|L5|G|963
8XSX|1|L5|A|964
8XSX|1|L5|G|965
8XSX|1|L5|A|966
8XSX|1|L5|C|967
8XSX|1|L5|C|968
8XSX|1|L5|C|969
8XSX|1|L5|G|970
8XSX|1|L5|U|971
8XSX|1|L5|C|972
8XSX|1|L5|G|973
8XSX|1|L5|C|974
8XSX|1|L5|C|975
8XSX|1|L5|G|976
*
8XSX|1|L5|C|1278
8XSX|1|L5|A|1279
8XSX|1|L5|C|1280
8XSX|1|L5|G|1281
8XSX|1|L5|G|1282
8XSX|1|L5|G|1283
8XSX|1|L5|G|1284

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LE
60S ribosomal protein L6
Chain LF
60S ribosomal protein L7
Chain Le
60S ribosomal protein L32

Coloring options:

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