J3_8XSX_036

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

8XSX|1|L5|G|4115, 8XSX|1|L5|C|4116, 8XSX|1|L5|U|4117, 8XSX|1|L5|U|4118, 8XSX|1|L5|C|4119, 8XSX|1|L5|U|4120, 8XSX|1|L5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|G|4091
8XSX|1|L5|G|4092
8XSX|1|L5|G|4093
8XSX|1|L5|G|4094
8XSX|1|L5|G|4095
8XSX|1|L5|C|4096
8XSX|1|L5|G|4097
*
8XSX|1|L5|C|4112
8XSX|1|L5|U|4113
8XSX|1|L5|C|4114
8XSX|1|L5|G|4115
8XSX|1|L5|C|4116
8XSX|1|L5|U|4117
8XSX|1|L5|U|4118
8XSX|1|L5|C|4119
8XSX|1|L5|U|4120
8XSX|1|L5|G|4121
8XSX|1|L5|G|4122
8XSX|1|L5|C|4123
8XSX|1|L5|G|4124
8XSX|1|L5|C|4125
8XSX|1|L5|C|4126
8XSX|1|L5|A|4127
8XSX|1|L5|A|4128
8XSX|1|L5|G|4129
*
8XSX|1|L5|C|4155
8XSX|1|L5|G|4156
8XSX|1|L5|A|4157
8XSX|1|L5|C|4158

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a

Chain SB

40S ribosomal protein S3a