J3_8XSY_028

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8XSY|1|L5|G|965, 8XSY|1|L5|C|967, 8XSY|1|L5|U|971, 8XSY|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSY|1|L5|C|712
8XSY|1|L5|C|713
*
8XSY|1|L5|G|955
8XSY|1|L5|A|956
8XSY|1|L5|G|957
8XSY|1|L5|G|958
8XSY|1|L5|G|959
8XSY|1|L5|A|960
8XSY|1|L5|G|961
8XSY|1|L5|C|962
8XSY|1|L5|G|963
8XSY|1|L5|A|964
8XSY|1|L5|G|965
8XSY|1|L5|A|966
8XSY|1|L5|C|967
8XSY|1|L5|C|968
8XSY|1|L5|C|969
8XSY|1|L5|G|970
8XSY|1|L5|U|971
8XSY|1|L5|C|972
8XSY|1|L5|G|973
8XSY|1|L5|C|974
8XSY|1|L5|C|975
8XSY|1|L5|G|976
*
8XSY|1|L5|C|1278
8XSY|1|L5|A|1279
8XSY|1|L5|C|1280
8XSY|1|L5|G|1281
8XSY|1|L5|G|1282
8XSY|1|L5|G|1283
8XSY|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32