J3_8XSY_035
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 8XSY|1|L5|G|4115, 8XSY|1|L5|C|4116, 8XSY|1|L5|U|4117, 8XSY|1|L5|U|4118, 8XSY|1|L5|C|4119, 8XSY|1|L5|U|4120, 8XSY|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XSY|1|L5|G|4091
8XSY|1|L5|G|4092
8XSY|1|L5|G|4093
8XSY|1|L5|G|4094
8XSY|1|L5|G|4095
8XSY|1|L5|C|4096
8XSY|1|L5|G|4097
*
8XSY|1|L5|C|4112
8XSY|1|L5|U|4113
8XSY|1|L5|C|4114
8XSY|1|L5|G|4115
8XSY|1|L5|C|4116
8XSY|1|L5|U|4117
8XSY|1|L5|U|4118
8XSY|1|L5|C|4119
8XSY|1|L5|U|4120
8XSY|1|L5|G|4121
8XSY|1|L5|G|4122
8XSY|1|L5|C|4123
8XSY|1|L5|G|4124
8XSY|1|L5|C|4125
8XSY|1|L5|C|4126
8XSY|1|L5|A|4127
8XSY|1|L5|A|4128
8XSY|1|L5|G|4129
*
8XSY|1|L5|C|4155
8XSY|1|L5|G|4156
8XSY|1|L5|A|4157
8XSY|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CB
- SERPINE1 mRNA-binding protein 1
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
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