3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGGC*GGACAAG*CCCGAGAUUG
Length
22 nucleotides
Bulged bases
8XSZ|1|S2|U|1477
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8XSZ|1|S2|C|1391
8XSZ|1|S2|U|1392
8XSZ|1|S2|G|1393
8XSZ|1|S2|G|1394
8XSZ|1|S2|C|1395
*
8XSZ|1|S2|G|1450
8XSZ|1|S2|G|1451
8XSZ|1|S2|A|1452
8XSZ|1|S2|C|1453
8XSZ|1|S2|A|1454
8XSZ|1|S2|A|1455
8XSZ|1|S2|G|1456
*
8XSZ|1|S2|C|1470
8XSZ|1|S2|C|1471
8XSZ|1|S2|C|1472
8XSZ|1|S2|G|1473
8XSZ|1|S2|A|1474
8XSZ|1|S2|G|1475
8XSZ|1|S2|A|1476
8XSZ|1|S2|U|1477
8XSZ|1|S2|U|1478
8XSZ|1|S2|G|1479

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SD
40S ribosomal protein S3
Chain SF
40S ribosomal protein S5
Chain SQ
40S ribosomal protein S16
Chain SR
40S ribosomal protein S17
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29
Chain Sg
Receptor of activated protein C kinase 1

Coloring options:

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