J3_8XSZ_023

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8XSZ|1|L5|A|218, 8XSZ|1|L5|G|219, 8XSZ|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|C|196
8XSZ|1|L5|A|197
8XSZ|1|L5|A|198
8XSZ|1|L5|G|199
*
8XSZ|1|L5|C|215
8XSZ|1|L5|C|216
8XSZ|1|L5|C|217
8XSZ|1|L5|A|218
8XSZ|1|L5|G|219
8XSZ|1|L5|C|220
8XSZ|1|L5|C|221
8XSZ|1|L5|C|222
8XSZ|1|L5|G|223
8XSZ|1|L5|U|224
8XSZ|1|L5|G|225
8XSZ|1|L5|G|226
8XSZ|1|L5|A|227
8XSZ|1|L5|C|228
*
8XSZ|1|L5|G|240
8XSZ|1|L5|G|241
8XSZ|1|L5|U|242
8XSZ|1|L5|A|243
8XSZ|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26