J3_8XSZ_028

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8XSZ|1|L5|G|959, 8XSZ|1|L5|G|965, 8XSZ|1|L5|C|967, 8XSZ|1|L5|C|968, 8XSZ|1|L5|C|969, 8XSZ|1|L5|U|971, 8XSZ|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|C|712
8XSZ|1|L5|C|713
*
8XSZ|1|L5|G|955
8XSZ|1|L5|A|956
8XSZ|1|L5|G|957
8XSZ|1|L5|G|958
8XSZ|1|L5|G|959
8XSZ|1|L5|A|960
8XSZ|1|L5|G|961
8XSZ|1|L5|C|962
8XSZ|1|L5|G|963
8XSZ|1|L5|A|964
8XSZ|1|L5|G|965
8XSZ|1|L5|A|966
8XSZ|1|L5|C|967
8XSZ|1|L5|C|968
8XSZ|1|L5|C|969
8XSZ|1|L5|G|970
8XSZ|1|L5|U|971
8XSZ|1|L5|C|972
8XSZ|1|L5|G|973
8XSZ|1|L5|C|974
8XSZ|1|L5|C|975
8XSZ|1|L5|G|976
*
8XSZ|1|L5|C|1278
8XSZ|1|L5|A|1279
8XSZ|1|L5|C|1280
8XSZ|1|L5|G|1281
8XSZ|1|L5|G|1282
8XSZ|1|L5|G|1283
8XSZ|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32