3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAGUCGAGAGUGGACGGGAGCGGC*GAGCCC*GGACGCUACG
Length
40 nucleotides
Bulged bases
8XSZ|1|L5|G|2096, 8XSZ|1|L5|U|2097, 8XSZ|1|L5|C|2255, 8XSZ|1|L5|C|2266, 8XSZ|1|L5|U|2267, 8XSZ|1|L5|C|2269
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8XSZ|1|L5|C|2087
8XSZ|1|L5|A|2088
8XSZ|1|L5|G|2089
8XSZ|1|L5|U|2090
8XSZ|1|L5|C|2091
8XSZ|1|L5|G|2092
8XSZ|1|L5|A|2093
8XSZ|1|L5|G|2094
8XSZ|1|L5|A|2095
8XSZ|1|L5|G|2096
8XSZ|1|L5|U|2097
8XSZ|1|L5|G|2098
8XSZ|1|L5|G|2099
8XSZ|1|L5|A|2100
8XSZ|1|L5|C|2101
8XSZ|1|L5|G|2102
8XSZ|1|L5|G|2103
8XSZ|1|L5|G|2104
8XSZ|1|L5|A|2105
8XSZ|1|L5|G|2106
8XSZ|1|L5|C|2107
8XSZ|1|L5|G|2108
8XSZ|1|L5|G|2109
8XSZ|1|L5|C|2110
*
8XSZ|1|L5|G|2252
8XSZ|1|L5|A|2253
8XSZ|1|L5|G|2254
8XSZ|1|L5|C|2255
8XSZ|1|L5|C|2256
8XSZ|1|L5|C|2257
*
8XSZ|1|L5|G|2261
8XSZ|1|L5|G|2262
8XSZ|1|L5|A|2263
8XSZ|1|L5|C|2264
8XSZ|1|L5|G|2265
8XSZ|1|L5|C|2266
8XSZ|1|L5|U|2267
8XSZ|1|L5|A|2268
8XSZ|1|L5|C|2269
8XSZ|1|L5|G|2270

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LE
60S ribosomal protein L6
Chain LF
60S ribosomal protein L7
Chain LQ
60S ribosomal protein L18
Chain Lb
60S ribosomal protein L29
Chain Lr
60S ribosomal protein L28

Coloring options:

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