J3_8XSZ_032

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

8XSZ|1|L5|C|2470, 8XSZ|1|L5|A|2472, 8XSZ|1|L5|G|2475, 8XSZ|1|L5|G|2503, 8XSZ|1|L5|C|2504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XSZ_032 not in the Motif Atlas

Homologous match to J3_8CRE_016

Geometric discrepancy: 0.595

The information below is about J3_8CRE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65403.1

Basepair signature

cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8XSZ|1|L5|A|2451
8XSZ|1|L5|G|2452
8XSZ|1|L5|A|2453
8XSZ|1|L5|U|2454
8XSZ|1|L5|G|2455
8XSZ|1|L5|G|2456
*
8XSZ|1|L5|C|2465
8XSZ|1|L5|G|2466
8XSZ|1|L5|U|2467
8XSZ|1|L5|U|2468
8XSZ|1|L5|C|2469
8XSZ|1|L5|C|2470
8XSZ|1|L5|G|2471
8XSZ|1|L5|A|2472
8XSZ|1|L5|A|2473
8XSZ|1|L5|G|2474
8XSZ|1|L5|G|2475
8XSZ|1|L5|G|2476
*
8XSZ|1|L5|C|2501
8XSZ|1|L5|G|2502
8XSZ|1|L5|G|2503
8XSZ|1|L5|C|2504
8XSZ|1|L5|C|2505
8XSZ|1|L5|G|2506
8XSZ|1|L5|A|2507
8XSZ|1|L5|U|2508

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37