J3_8XSZ_035

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

8XSZ|1|L5|G|4115, 8XSZ|1|L5|C|4116, 8XSZ|1|L5|U|4117, 8XSZ|1|L5|U|4118, 8XSZ|1|L5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|G|4091
8XSZ|1|L5|G|4092
8XSZ|1|L5|G|4093
8XSZ|1|L5|G|4094
8XSZ|1|L5|G|4095
8XSZ|1|L5|C|4096
8XSZ|1|L5|G|4097
*
8XSZ|1|L5|C|4112
8XSZ|1|L5|U|4113
8XSZ|1|L5|C|4114
8XSZ|1|L5|G|4115
8XSZ|1|L5|C|4116
8XSZ|1|L5|U|4117
8XSZ|1|L5|U|4118
8XSZ|1|L5|C|4119
8XSZ|1|L5|U|4120
8XSZ|1|L5|G|4121
8XSZ|1|L5|G|4122
8XSZ|1|L5|C|4123
8XSZ|1|L5|G|4124
8XSZ|1|L5|C|4125
8XSZ|1|L5|C|4126
8XSZ|1|L5|A|4127
8XSZ|1|L5|A|4128
8XSZ|1|L5|G|4129
*
8XSZ|1|L5|C|4155
8XSZ|1|L5|G|4156
8XSZ|1|L5|A|4157
8XSZ|1|L5|C|4158

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

SERPINE1 mRNA-binding protein 1

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a

Chain SB

40S ribosomal protein S3a