J3_8XT0_007

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUU*AUUAACCU*AGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT0|1|S1|G|40
8XT0|1|S1|A|41
8XT0|1|S1|U|42
8XT0|1|S1|U|43
*
8XT0|1|S1|A|176
8XT0|1|S1|U|177
8XT0|1|S1|U|178
8XT0|1|S1|A|179
8XT0|1|S1|A|180
8XT0|1|S1|C|181
8XT0|1|S1|C|182
8XT0|1|S1|U|183
*
8XT0|1|S1|A|209
8XT0|1|S1|G|210
8XT0|1|S1|C|211

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SL

Small ribosomal subunit protein uS12m

Chain SP

Small ribosomal subunit protein bS16m

Chain Sa

Small ribosomal subunit protein mS25