J3_8XT0_008

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCAGUAA*UGAACAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT0|1|S1|C|545
8XT0|1|S1|U|546
8XT0|1|S1|C|547
*
8XT0|1|S1|G|781
8XT0|1|S1|C|782
8XT0|1|S1|A|783
8XT0|1|S1|G|784
8XT0|1|S1|U|785
8XT0|1|S1|A|786
8XT0|1|S1|A|787
*
8XT0|1|S1|U|809
8XT0|1|S1|G|810
8XT0|1|S1|A|811
8XT0|1|S1|A|812
8XT0|1|S1|C|813
8XT0|1|S1|A|814
8XT0|1|S1|G|815

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SI

Small ribosomal subunit protein uS9m

Chain Sm

Small ribosomal subunit protein mS37