J3_8XT0_009

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XT0_009 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1573

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8XT0|1|S1|A|551
8XT0|1|S1|G|552
8XT0|1|S1|G|553
8XT0|1|S1|A|554
*
8XT0|1|S1|U|717
8XT0|1|S1|A|718
8XT0|1|S1|C|719
*
8XT0|1|S1|G|774
8XT0|1|S1|G|775
8XT0|1|S1|A|776
8XT0|1|S1|U|777

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SI

Small ribosomal subunit protein uS9m