J3_8XT0_012

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUUU*AACGAUAG*UCGAAGGUG

Length

22 nucleotides

Bulged bases

8XT0|1|S1|U|722, 8XT0|1|S1|U|744, 8XT0|1|S1|G|772

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT0|1|S1|C|719
8XT0|1|S1|A|720
8XT0|1|S1|U|721
8XT0|1|S1|U|722
8XT0|1|S1|U|723
*
8XT0|1|S1|A|735
8XT0|1|S1|A|736
8XT0|1|S1|C|741
8XT0|1|S1|G|742
8XT0|1|S1|A|743
8XT0|1|S1|U|744
8XT0|1|S1|A|745
8XT0|1|S1|G|746
*
8XT0|1|S1|U|766
8XT0|1|S1|C|767
8XT0|1|S1|G|768
8XT0|1|S1|A|769
8XT0|1|S1|A|770
8XT0|1|S1|G|771
8XT0|1|S1|G|772
8XT0|1|S1|U|773
8XT0|1|S1|G|774

Current chains

Chain S1

12s rRNA

Nearby chains

Chain Lv

Large ribosomal subunit protein mL48

Chain SG

Small ribosomal subunit protein uS7m

Chain Se

Small ribosomal subunit protein mS29