J3_8XT0_016

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCA*UCAAUUGAUCC*GACCAAC

Length

21 nucleotides

Bulged bases

8XT0|1|L1|U|1225, 8XT0|1|L1|A|1244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT0|1|L1|G|1176
8XT0|1|L1|C|1177
8XT0|1|L1|A|1178
*
8XT0|1|L1|U|1220
8XT0|1|L1|C|1221
8XT0|1|L1|A|1222
8XT0|1|L1|A|1223
8XT0|1|L1|U|1224
8XT0|1|L1|U|1225
8XT0|1|L1|G|1226
8XT0|1|L1|A|1227
8XT0|1|L1|U|1228
8XT0|1|L1|C|1229
8XT0|1|L1|C|1230
*
8XT0|1|L1|G|1239
8XT0|1|L1|A|1240
8XT0|1|L1|C|1241
8XT0|1|L1|C|1242
8XT0|1|L1|A|1243
8XT0|1|L1|A|1244
8XT0|1|L1|C|1245

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LO

Large ribosomal subunit protein uL15m

Chain La

Large ribosomal subunit protein bL27m

Chain Lg

Large ribosomal subunit protein bL33m

Chain Li

Large ribosomal subunit protein bL35m