J3_8XT1_001

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8XT1|1|L1|G|248, 8XT1|1|L1|G|332, 8XT1|1|L1|A|333

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XT1_001 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1242

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

8XT1|1|L1|C|245
8XT1|1|L1|G|246
8XT1|1|L1|A|247
8XT1|1|L1|G|248
8XT1|1|L1|C|249
8XT1|1|L1|U|250
8XT1|1|L1|A|251
*
8XT1|1|L1|U|313
8XT1|1|L1|A|314
8XT1|1|L1|G|315
*
8XT1|1|L1|C|331
8XT1|1|L1|G|332
8XT1|1|L1|A|333
8XT1|1|L1|G|334

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41