J3_8XT1_004

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CAAUUAAC*GUC

Length

14 nucleotides

Bulged bases

8XT1|1|L1|C|674, 8XT1|1|L1|U|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT1|1|L1|G|673
8XT1|1|L1|C|674
8XT1|1|L1|G|675
*
8XT1|1|L1|C|698
8XT1|1|L1|A|699
8XT1|1|L1|A|700
8XT1|1|L1|U|701
8XT1|1|L1|U|702
8XT1|1|L1|A|703
8XT1|1|L1|A|704
8XT1|1|L1|C|705
*
8XT1|1|L1|G|751
8XT1|1|L1|U|752
8XT1|1|L1|C|753

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LW

Large ribosomal subunit protein uL23m

Chain Lo

Large ribosomal subunit protein mL41

Chain Lu

Large ribosomal subunit protein uL29m

Chain Sf

Large ribosomal subunit protein mL65