J3_8XT1_008
3D structure
- PDB id
- 8XT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAAAUUUAACACCCAUAG*CAAUUAAG*CAACACCCACUACCUAAAAAAUCCCAAACAUAUAACU
- Length
- 63 nucleotides
- Bulged bases
- 8XT1|1|L1|A|484, 8XT1|1|L1|U|488, 8XT1|1|L1|U|489, 8XT1|1|L1|C|554, 8XT1|1|L1|C|555, 8XT1|1|L1|U|563, 8XT1|1|L1|A|571, 8XT1|1|L1|U|572, 8XT1|1|L1|A|573, 8XT1|1|L1|U|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XT1|1|L1|A|483
8XT1|1|L1|A|484
8XT1|1|L1|A|485
8XT1|1|L1|A|486
8XT1|1|L1|U|487
8XT1|1|L1|U|488
8XT1|1|L1|U|489
8XT1|1|L1|A|490
8XT1|1|L1|A|491
8XT1|1|L1|C|492
8XT1|1|L1|A|493
8XT1|1|L1|C|494
8XT1|1|L1|C|495
8XT1|1|L1|C|496
8XT1|1|L1|A|497
8XT1|1|L1|U|498
8XT1|1|L1|A|499
8XT1|1|L1|G|500
*
8XT1|1|L1|C|520
8XT1|1|L1|A|521
8XT1|1|L1|A|522
8XT1|1|L1|U|523
8XT1|1|L1|U|524
8XT1|1|L1|A|525
8XT1|1|L1|A|526
8XT1|1|L1|G|527
*
8XT1|1|L1|C|542
8XT1|1|L1|A|543
8XT1|1|L1|A|544
8XT1|1|L1|C|545
8XT1|1|L1|A|546
8XT1|1|L1|C|547
8XT1|1|L1|C|548
8XT1|1|L1|C|549
8XT1|1|L1|A|550
8XT1|1|L1|C|551
8XT1|1|L1|U|552
8XT1|1|L1|A|553
8XT1|1|L1|C|554
8XT1|1|L1|C|555
8XT1|1|L1|U|556
8XT1|1|L1|A|557
8XT1|1|L1|A|558
8XT1|1|L1|A|559
8XT1|1|L1|A|560
8XT1|1|L1|A|561
8XT1|1|L1|A|562
8XT1|1|L1|U|563
8XT1|1|L1|C|564
8XT1|1|L1|C|565
8XT1|1|L1|C|566
8XT1|1|L1|A|567
8XT1|1|L1|A|568
8XT1|1|L1|A|569
8XT1|1|L1|C|570
8XT1|1|L1|A|571
8XT1|1|L1|U|572
8XT1|1|L1|A|573
8XT1|1|L1|U|574
8XT1|1|L1|A|575
8XT1|1|L1|A|576
8XT1|1|L1|C|577
8XT1|1|L1|U|578
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L3
- Large ribosomal subunit protein mL53
- Chain L4
- Large ribosomal subunit protein mL54
- Chain L6
- Large ribosomal subunit protein mL63
- Chain LC
- Large ribosomal subunit protein uL3m
- Chain LJ
- Large ribosomal subunit protein uL10m
- Chain LK
- Large ribosomal subunit protein uL11m
- Chain LM
- Large ribosomal subunit protein uL13m
- Chain LP
- Large ribosomal subunit protein uL16m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain Ld
- Large ribosomal subunit protein uL30m
- Chain Lj
- Large ribosomal subunit protein bL36m
- Chain Lz
- 39S ribosomal protein L52, mitochondrial
- Chain SR
- Large ribosomal subunit protein mL66
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