J3_8XT2_008

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCAGUAA*UGAACAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|S1|C|545
8XT2|1|S1|U|546
8XT2|1|S1|C|547
*
8XT2|1|S1|G|781
8XT2|1|S1|C|782
8XT2|1|S1|A|783
8XT2|1|S1|G|784
8XT2|1|S1|U|785
8XT2|1|S1|A|786
8XT2|1|S1|A|787
*
8XT2|1|S1|U|809
8XT2|1|S1|G|810
8XT2|1|S1|A|811
8XT2|1|S1|A|812
8XT2|1|S1|C|813
8XT2|1|S1|A|814
8XT2|1|S1|G|815

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SI

Small ribosomal subunit protein uS9m

Chain Sm

Small ribosomal subunit protein mS37