J3_8XT2_010

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

8XT2|1|S1|U|582, 8XT2|1|S1|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|S1|U|563
8XT2|1|S1|G|564
8XT2|1|S1|U|565
8XT2|1|S1|A|566
8XT2|1|S1|A|567
8XT2|1|S1|U|568
8XT2|1|S1|C|569
*
8XT2|1|S1|G|580
8XT2|1|S1|A|581
8XT2|1|S1|U|582
8XT2|1|S1|C|583
8XT2|1|S1|A|584
8XT2|1|S1|A|585
8XT2|1|S1|C|586
8XT2|1|S1|C|587
8XT2|1|S1|U|588
8XT2|1|S1|C|589
8XT2|1|S1|A|590
8XT2|1|S1|C|591
*
8XT2|1|S1|G|704
8XT2|1|S1|C|705
8XT2|1|S1|A|706
8XT2|1|S1|A|707

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS10m

Chain SN

Small ribosomal subunit protein uS14m