J3_8XT2_012

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUU*AACGAUAG*UCGAAGGUG

Length

22 nucleotides

Bulged bases

8XT2|1|S1|U|722, 8XT2|1|S1|U|744, 8XT2|1|S1|G|772

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|S1|C|719
8XT2|1|S1|A|720
8XT2|1|S1|U|721
8XT2|1|S1|U|722
8XT2|1|S1|U|723
*
8XT2|1|S1|A|735
8XT2|1|S1|A|736
8XT2|1|S1|C|741
8XT2|1|S1|G|742
8XT2|1|S1|A|743
8XT2|1|S1|U|744
8XT2|1|S1|A|745
8XT2|1|S1|G|746
*
8XT2|1|S1|U|766
8XT2|1|S1|C|767
8XT2|1|S1|G|768
8XT2|1|S1|A|769
8XT2|1|S1|A|770
8XT2|1|S1|G|771
8XT2|1|S1|G|772
8XT2|1|S1|U|773
8XT2|1|S1|G|774

Current chains

Chain S1

12s rRNA

Nearby chains

Chain Lv

Large ribosomal subunit protein mL48

Chain SG

Small ribosomal subunit protein uS7m

Chain Se

Small ribosomal subunit protein mS29