J3_8XT2_017

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CU*AAUAGAC*GG

Length

11 nucleotides

Bulged bases

8XT2|1|S1|A|372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|S1|C|326
8XT2|1|S1|U|327
*
8XT2|1|S1|A|367
8XT2|1|S1|A|368
8XT2|1|S1|U|369
8XT2|1|S1|A|370
8XT2|1|S1|G|371
8XT2|1|S1|A|372
8XT2|1|S1|C|373
*
8XT2|1|S1|G|383
8XT2|1|S1|G|384

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein bS6m

Chain SK

Small ribosomal subunit protein uS11m

Chain ST

Small ribosomal subunit protein bS18m

Chain SW

Small ribosomal subunit protein bS21m

Chain Sm

Small ribosomal subunit protein mS37