J3_8XU8_002

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8XU8|1|2|A|225, 8XU8|1|2|A|226, 8XU8|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|2|A|213
8XU8|1|2|G|214
8XU8|1|2|A|215
8XU8|1|2|U|216
8XU8|1|2|A|217
8XU8|1|2|A|218
8XU8|1|2|A|219
8XU8|1|2|A|220
8XU8|1|2|A|221
8XU8|1|2|A|222
8XU8|1|2|U|223
8XU8|1|2|C|224
8XU8|1|2|A|225
8XU8|1|2|A|226
8XU8|1|2|U|227
8XU8|1|2|G|228
*
8XU8|1|2|C|237
8XU8|1|2|U|238
8XU8|1|2|C|239
8XU8|1|2|U|240
8XU8|1|2|U|241
8XU8|1|2|U|242
8XU8|1|2|G|243
*
8XU8|1|2|C|250
8XU8|1|2|A|251
8XU8|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A