J3_8XU8_013

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGG*UUGUC*GAUAA

Length

13 nucleotides

Bulged bases

8XU8|1|2|A|1321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|2|U|1293
8XU8|1|2|G|1294
8XU8|1|2|G|1295
*
8XU8|1|2|U|1302
8XU8|1|2|U|1303
8XU8|1|2|G|1304
8XU8|1|2|U|1305
8XU8|1|2|C|1306
*
8XU8|1|2|G|1318
8XU8|1|2|A|1319
8XU8|1|2|U|1320
8XU8|1|2|A|1321
8XU8|1|2|A|1322

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A

Chain SP

Small ribosomal subunit protein uS2A

Chain SR

Small ribosomal subunit protein uS5

Chain Sa

Small ribosomal subunit protein eS21A