J3_8XU8_022

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAACUAU*AUAG*CGAA

Length

16 nucleotides

Bulged bases

8XU8|1|A|A|817, 8XU8|1|A|G|924, 8XU8|1|A|A|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|A|U|814
8XU8|1|A|G|815
8XU8|1|A|A|816
8XU8|1|A|A|817
8XU8|1|A|C|818
8XU8|1|A|U|819
8XU8|1|A|A|820
8XU8|1|A|U|821
*
8XU8|1|A|A|904
8XU8|1|A|U|905
8XU8|1|A|A|906
8XU8|1|A|G|907
*
8XU8|1|A|C|923
8XU8|1|A|G|924
8XU8|1|A|A|925
8XU8|1|A|A|926

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2A

Chain P

Large ribosomal subunit protein eL15A

Chain l

Large ribosomal subunit protein eL37A