J3_8XU8_037

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAU

Length

32 nucleotides

Bulged bases

8XU8|1|A|A|3172, 8XU8|1|A|G|3173, 8XU8|1|A|A|3215, 8XU8|1|A|G|3216, 8XU8|1|A|C|3217, 8XU8|1|A|G|3219, 8XU8|1|A|A|3268, 8XU8|1|A|U|3270, 8XU8|1|A|C|3272, 8XU8|1|A|G|3276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|A|A|3170
8XU8|1|A|U|3171
8XU8|1|A|A|3172
8XU8|1|A|G|3173
8XU8|1|A|A|3174
8XU8|1|A|U|3175
8XU8|1|A|G|3176
*
8XU8|1|A|C|3212
8XU8|1|A|A|3213
8XU8|1|A|U|3214
8XU8|1|A|A|3215
8XU8|1|A|G|3216
8XU8|1|A|C|3217
8XU8|1|A|A|3218
8XU8|1|A|G|3219
8XU8|1|A|G|3220
*
8XU8|1|A|C|3265
8XU8|1|A|G|3266
8XU8|1|A|A|3267
8XU8|1|A|A|3268
8XU8|1|A|U|3269
8XU8|1|A|U|3270
8XU8|1|A|G|3271
8XU8|1|A|C|3272
8XU8|1|A|A|3273
8XU8|1|A|A|3274
8XU8|1|A|U|3275
8XU8|1|A|G|3276
8XU8|1|A|U|3277
8XU8|1|A|C|3278
8XU8|1|A|A|3279
8XU8|1|A|U|3280

Current chains

Chain A

25S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein eL6B

Chain O

Large ribosomal subunit protein eL14A

Chain Q

Large ribosomal subunit protein uL13A

Chain R

Large ribosomal subunit protein uL22A

Chain h

Large ribosomal subunit protein eL33A