J3_8XXL_002
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8XXL|1|S2|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XXL_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0792
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8XXL|1|S2|A|938
8XXL|1|S2|U|939
8XXL|1|S2|U|940
8XXL|1|S2|C|941
*
8XXL|1|S2|G|985
8XXL|1|S2|G|986
8XXL|1|S2|A|987
8XXL|1|S2|C|988
8XXL|1|S2|C|989
8XXL|1|S2|A|990
8XXL|1|S2|G|991
8XXL|1|S2|A|992
8XXL|1|S2|G|993
*
8XXL|1|S2|C|1000
8XXL|1|S2|A|1001
8XXL|1|S2|U|1002
8XXL|1|S2|U|1003
8XXL|1|S2|U|1004
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14
- Chain SR
- 40S ribosomal protein S17
- Chain Sa
- 40S ribosomal protein S26
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