J3_8XZ3_002

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8XZ3|1|A|U|801, 8XZ3|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XZ3_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0977

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8XZ3|1|A|U|798
8XZ3|1|A|G|799
8XZ3|1|A|A|800
8XZ3|1|A|U|801
8XZ3|1|A|C|802
8XZ3|1|A|U|803
8XZ3|1|A|A|804
*
8XZ3|1|A|U|888
8XZ3|1|A|A|889
8XZ3|1|A|G|890
*
8XZ3|1|A|C|906
8XZ3|1|A|A|907
8XZ3|1|A|A|908
8XZ3|1|A|A|909

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain d

Large ribosomal subunit protein bL34