J3_8XZ3_015
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 8XZ3|1|A|U|69, 8XZ3|1|A|A|71
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XZ3_015 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0903
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8XZ3|1|A|A|53
8XZ3|1|A|C|54
*
8XZ3|1|A|G|67
8XZ3|1|A|A|68
8XZ3|1|A|U|69
8XZ3|1|A|A|70
8XZ3|1|A|A|71
8XZ3|1|A|G|72
8XZ3|1|A|C|73
*
8XZ3|1|A|G|107
8XZ3|1|A|A|108
8XZ3|1|A|U|109
8XZ3|1|A|G|110
8XZ3|1|A|U|111
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- Large ribosomal subunit protein uL23
- Chain Z
- Large ribosomal subunit protein uL29
- Chain d
- Large ribosomal subunit protein bL34
Coloring options: