3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
AGCU*ACGUUCUAGCAUUCAAG*UGAU
Length
25 nucleotides
Bulged bases
8Y0U|1|C1|G|2549, 8Y0U|1|C1|U|2550, 8Y0U|1|C1|U|2551, 8Y0U|1|C1|A|2554, 8Y0U|1|C1|A|2557, 8Y0U|1|C1|U|2558, 8Y0U|1|C1|U|2559, 8Y0U|1|C1|C|2560
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Y0U_008 not in the Motif Atlas
Homologous match to J3_8C3A_009
Geometric discrepancy: 0.1773
The information below is about J3_8C3A_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_02167.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
Number of instances in this motif group
1

Unit IDs

8Y0U|1|C1|A|2529
8Y0U|1|C1|G|2530
8Y0U|1|C1|C|2531
8Y0U|1|C1|U|2532
*
8Y0U|1|C1|A|2547
8Y0U|1|C1|C|2548
8Y0U|1|C1|G|2549
8Y0U|1|C1|U|2550
8Y0U|1|C1|U|2551
8Y0U|1|C1|C|2552
8Y0U|1|C1|U|2553
8Y0U|1|C1|A|2554
8Y0U|1|C1|G|2555
8Y0U|1|C1|C|2556
8Y0U|1|C1|A|2557
8Y0U|1|C1|U|2558
8Y0U|1|C1|U|2559
8Y0U|1|C1|C|2560
8Y0U|1|C1|A|2561
8Y0U|1|C1|A|2562
8Y0U|1|C1|G|2563
*
8Y0U|1|C1|U|2578
8Y0U|1|C1|G|2579
8Y0U|1|C1|A|2580
8Y0U|1|C1|U|2581

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LA
Large ribosomal subunit protein uL2A
Chain LG
Large ribosomal subunit protein eL8A
Chain LX
Large ribosomal subunit protein uL23
Chain LZ
Large ribosomal subunit protein eL27A
Chain Lc
Large ribosomal subunit protein eL30
Chain Lg
Large ribosomal subunit protein eL34A
Chain Lp
Large ribosomal subunit protein eL43A

Coloring options:


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