J3_8Y0U_008
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8Y0U|1|C1|G|2549, 8Y0U|1|C1|U|2550, 8Y0U|1|C1|U|2551, 8Y0U|1|C1|A|2554, 8Y0U|1|C1|A|2557, 8Y0U|1|C1|U|2558, 8Y0U|1|C1|U|2559, 8Y0U|1|C1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y0U_008 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1773
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Y0U|1|C1|A|2529
8Y0U|1|C1|G|2530
8Y0U|1|C1|C|2531
8Y0U|1|C1|U|2532
*
8Y0U|1|C1|A|2547
8Y0U|1|C1|C|2548
8Y0U|1|C1|G|2549
8Y0U|1|C1|U|2550
8Y0U|1|C1|U|2551
8Y0U|1|C1|C|2552
8Y0U|1|C1|U|2553
8Y0U|1|C1|A|2554
8Y0U|1|C1|G|2555
8Y0U|1|C1|C|2556
8Y0U|1|C1|A|2557
8Y0U|1|C1|U|2558
8Y0U|1|C1|U|2559
8Y0U|1|C1|C|2560
8Y0U|1|C1|A|2561
8Y0U|1|C1|A|2562
8Y0U|1|C1|G|2563
*
8Y0U|1|C1|U|2578
8Y0U|1|C1|G|2579
8Y0U|1|C1|A|2580
8Y0U|1|C1|U|2581
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain LX
- Large ribosomal subunit protein uL23
- Chain LZ
- Large ribosomal subunit protein eL27A
- Chain Lc
- Large ribosomal subunit protein eL30
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lp
- Large ribosomal subunit protein eL43A
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